the latest version should be able to mux all the input audio/subs if you take the TS version of the script and set line 23 - 25 to YES.
you must have this file in the tools folder and the input language must be supported. if your language is not in this file, it's not very complicated to edit it with notepad and add any tongue you wish.
https://drive.google.com/file/d/1xDMNcf ... share_link
anyway, if none of this work, as I said before, disable the muxing at line 21. Then when 4/3 has been completed, you can mux any audio/sub you want with tsmuxer. This will work for sure and for any input.