I don't know...
Network issue? HDD issue? Maybe the player choked at some point because of frame-by-frame?
Because when you set uneven L5 offsets in resolve or cm_analyze, the dovi_tool(XML to rpu) has no way to calculate exactly which position the offsets go because the XML file works with aspect ratio values only.Also I would check if there isn't a bug in your program switching the left and right offset. I'm sure I entered the left offset as 125 and the right offset as 124, but now the metadata is saying it's reversed (like the one you posted).
This is exactly the reason why the script (1-1) has an option to edit L5 with XML inputs.