Thanks for replying.
Here's the log:
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Debug log started at Mon Apr 05 17:23:22 2021 , written by MakeMKV v1.16.3 win(x64-release)
001005:0000 MakeMKV v1.16.3 win(x64-release) started
001004:0000 Debug logging enabled, log will be saved as file://C:\Users\Me/MakeMKV_log.txt
Using 262272KB for read cache.
No SDF v07e: HL-DT-ST_DVDRAM_GU40N_QX21_201012021117_M47C5BN5746
DEBUG: Code 3 at HFuPt/Gy+]n6ub.|sx^Z;r\.:29395310
SDF id v07e: HL-DT-ST_DVDRAM_GU40N_QX21_201012021117_M47C5BN5746
No SDF v07e: HL-DT-ST_DVDRAM_GU40N_QX21_201012021117_M47C5BN5746
No auto SDF v07e: HL-DT-ST_DVDRAM_GU40N_QX21_201012021117_M47C5BN5746
DEBUG: Code 0 at gPRI"yQ}F4Le@?MT?:121264142
DEBUG: Code 0 at m%E[BU3w+&;Ubw)*:121268604
No SDF v07e: HL-DT-ST_DVDRAM_GU40N_QX21_201012021117_M47C5BN5746
DEBUG: Code 3 at HFuPt/Gy+]n6ub.|sx^Z;r\.:29395310
SDF id v07e: HL-DT-ST_DVDRAM_GU40N_QX21_201012021117_M47C5BN5746
003007:0000 Using direct disc access mode
003025:0000 Title #1 has length of 49 seconds which is less than minimum title length of 120 seconds and was therefore skipped
003024:1000 Complex multiplex encountered - 3 cells and 1744 VOBUs have to be scanned. This may take some time, please be patient - it can't be avoided.
003028:0000 Title #2 was added (3 cell(s), 0:29:01)
003024:1000 Complex multiplex encountered - 3 cells and 1726 VOBUs have to be scanned. This may take some time, please be patient - it can't be avoided.
003028:0000 Title #2/0/1 was added (3 cell(s), 0:28:43)
003024:1000 Complex multiplex encountered - 3 cells and 1742 VOBUs have to be scanned. This may take some time, please be patient - it can't be avoided.
003028:0000 Title #2/0/2 was added (3 cell(s), 0:28:59)
003024:1000 Complex multiplex encountered - 2 cells and 344 VOBUs have to be scanned. This may take some time, please be patient - it can't be avoided.
003028:0000 Title #2/0/3 was added (2 cell(s), 0:05:42)
003024:1000 Complex multiplex encountered - 2 cells and 1395 VOBUs have to be scanned. This may take some time, please be patient - it can't be avoided.
003028:0000 Title #2/0/4 was added (2 cell(s), 0:23:13)
003024:1000 Complex multiplex encountered - 3 cells and 1744 VOBUs have to be scanned. This may take some time, please be patient - it can't be avoided.
003028:0000 Title #2/0/5 was added (3 cell(s), 0:29:01)
003024:1000 Complex multiplex encountered - 1 cells and 1870 VOBUs have to be scanned. This may take some time, please be patient - it can't be avoided.
003028:0000 Title #3 was added (1 cell(s), 0:31:07)
001003:0020 DEBUG: Code 233 at lxEK++UxMJwU/Sqo/9INVXIg:0
005011:0000 Operation successfully completed
The problem is...
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003028:0000 Title #2/0/3 was added (2 cell(s), 0:05:42)
003028:0000 Title #2/0/4 was added (2 cell(s), 0:23:13)
...which are 2 parts of the same episode.
It's not just this one disc it's a few discs from the same show and as far as I can tell so far, the same episode number in case that matters.
Both parts play fine in VLC media player but not after joining them together.
Thanks for any help.