I noticed this problem with two different titles. Both Blu-rays, Mortal Kombat and now Outland (1981). The movie is converted fine, but the only other content, which happens to be a SD trailer, is not.SmartLabs tsMuxeR. Version 1.10.6 http://www.smlabs.net
Decoding H264 stream (track 1): Profile: High@4.0 Resolution: 720:480i Frame rate: 29.97
H.264 stream does not contain fps field. Muxing fps=29.97
Decoding AC3 stream (track 2): Bitrate: 192Kbps Sample Rate: 48KHz Channels: 2
B-pyramid level 2 detected. Shift DTS to 3 frames
Processed 5221 video frames
Demux complete.
Demuxing time: 5 sec
The content is converted with a wrong aspect ratio.
I used TSMuxer to select the correspondent .m2ts file from the BD folder, and demux it. Then I used MKVToolnix to join the H264 / AC3 streams. Everything worked, for both.
To make things easier for you I am going to upload the MKV file with the wrong and correct AR.
Please wait for my response.