Maybe. I wouldn't say that it must be doing everything correct, but it's probably good enough. I know too little about video codecs and Matroska itself to tell about certain stuff.So then if I want to rip my DVDs to mkv, I guess the best answer is to trust Makemkv
Well the problem is, even if you should worry about it, what's next? Are you willing to analyze the video streams of the different shows or episodes and find out how they are really different? I mean something like literally looking into picture headers. (And before that, find out what tools you can use to do so -- assuming there's even a good enough one.)don't worry about what mediainfo reports about the frame rates (23.976. 24.000, or 29.970)?
It would be great if you can do that and then isolate what mkvtoolnix or makemkv might be doing wrong, but it's not exactly a trivial task.