I am a complete newbie so sorry for probably naive questions

What I try do is to mux a 3D file from a Blueray iso-image, so I can stream it via HDMI to my TV, which is caoable of 3D. What I learnd is that I can use makemkv for this and BD3D2MK3D.
My first question is why I should use makemkv anyway because in BD3D2MK3D I can load the iso-file directly and convert it to an MKV Side-by-Side 3D Video.mkv . If I use Makemkv I can convert the Iso-File to .mkv. So, is there an advantage to convert with Makemkv first and then use BD3D2MK3D - or can I skip this step?
My second question is about the quality of the MKV Side-by-Side 3D Video.mkv, which I have at last. I was wondering why it is so small? The size is only one tenth od the original ISO-File. So isn`t there a loss of quality? Or ist there a possibilty to have the MKV Side-by-Side 3D Video.mkv in original size?
Sorry if this is too confusing
