Just a comment about a minor issue:
Although very considerate, these "Program reads data faster than it can write to disk" messages always appear alot on my machine because i usually rip DVDs to .iso files in a RamDisk (Linux/tmpfs) and then let makemkvcon have fun with the .iso, in order to avoid the coffee break when it comes to "This may take some time, please be patient - it can't be avoided."...

Of course, my output SSD (for the .mkv files) can't compete with the read speed of the RamDisk, so these warnings are always there... lots of...