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I've tried different BluRay drives, different destination source drives, TV and movie discs, PC and Mac versions of the software. No matter what I've tried, I can not produce 2 identical MKV files from the same source disc.
I came across this thread after searching on Google, which suggests this was an issue in prior versions of MakeMKV but should be fixed now
http://www.makemkv.com/forum2/viewtopic.php?f=1&t=3660
Any advice?