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this post actually helped me figure out that the titles wee ripping out of sequence and i was able to locate missing scenes...it wa cut between 2 episodes that were, yep, out of sequence. this disk happened to run the titles in the opposite order ie epsisode 1 on the dvd corresponded to the last tit...

I was rolling along making mkv files for a tv series and it looked like it was identifying the episodes, but when i spot checked some episodes there were some scenes cut out; the disk playback had the full version so not sure why it cut? The full run time of the episode matches (length 42:04 ), but ...