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You can use the CLI to do the rips.

Or there could simply be an option to never auto-scan in the GUI. There are too many circumstances that arise (in my case, anyway) for a generic CLI script to work.

I'm just too lazy to sit there and fiddle with the rips, so the CLI works best for me. But I ...

You can use the CLI to do the rips.

Has the CLI been updated so it can do the same as the GUI yet?

I believe the GUI uses either the same code base as the CLI (or maybe even the actual binary itself) -- in any case if the banner of the CLI is to be believed, it is up-to-date.
I used a modified ...

You can use the CLI to do the rips. I have a batch file and a powershell script that I use to rip dvds with one click.
The script assumes that it is running on a 64-bit version of windows. You need to modify it to make it wonder in a 32-bit system.

In your case you'll have to create two copies of ...