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Could you share what errors MakeMKV is generating when you try to back it up using manual mode? If you're backing up Funimation DVDs from that era, I had a similar-sounding issue that I was able to resolve by using an additional program ( from this thread ), but before I make that recommendation I w...

I was just having a similar issue with another Funimation set, The Tower of Druaga (S.A.V.E.) : the main title with all the episodes on it would read and be available at the title selection screen, but once I started the backup it would just keep "Analyzing seamless segments" until it fail...

I spent the last few days trying to resolve the issue I was having out on my own, and I'm happy to say that I actually did manage to resolve it and have a loose understanding of why it was happening. I wanted to share what I was encountering and how I resolved it here, in case anyone else should run...